Yes. Some of them anyway. I have a few dozen Indian Muslim genetic samples in Harappa format, so figured I’d compare them against their Hindu counterparts to see how they differ.
Note that this analysis will not tell us how much Middle Eastern ancestry Indian Muslims have, just if they have a significant amount relative to Hindus. This is accomplished by simply creating a Middle-Eastern and Central Asian ancestry category (ME-CA) composed of those Harappa components maximized in non-Indian Middle-Eastern and Central Asian populations, and seeing how it varies across different groups. Four regions of India; Uttar Pradesh (UP), Gujarat, Bengal, and Telangana/Hyderabad will be examined.